Tutorials

• Curve Fitter
  • Ingest data into Curve Fitter
• Smoothing Script
  • Read GFA model from Excel
  • Smooth data and record all necessary variables in new dictionary (Trial and error to find correct function)
    • VCD
    • Titer
    • Glycoform Concentrations
      • Man7
      • Man6
      • Man5
      • G0-GlcNAc
      • G0F
      • G1a/b
      • G1Fa/b
      • G0
      • G0F-GlcNAc
      • G0F+GlcNAc
      • G2F
      • A1G1F
      • A1G2F
• Summary
• Write to excel
• Main script to run iGFA
  • Read GFA model from Excel
  • Read and format data
  • Initialize iGFA and ingest experimental measurements into iGFA’s class
  • Single start
  • Multi start
  • Save results
  • Visualization
    • Secreted Fluxes
    • Alpha
    • Beta
    • Gamma
    • Entry Flux
    • Reference Fluxes
    • Internal Fluxes

Todo

Need to add tutorials for model fitting and sensitivity analysis.